STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ56172.1Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family. (282 aa)    
Predicted Functional Partners:
SEQ56128.1
Putative endonuclease.
       0.773
pxpA
UPF0271 protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
    
  0.742
SEQ59597.1
N-methylhydantoinase A.
     
 0.736
SEQ40790.1
Cystathionine gamma-lyase / homocysteine desulfhydrase.
   
 
 0.732
SEQ55560.1
Cystathionine gamma-synthase.
   
 
 0.732
SER26391.1
Methionine-gamma-lyase.
   
 
 0.732
SEP85685.1
Inhibitor of KinA.
    
  0.710
SEP85767.1
Antagonist of KipI.
    
  0.710
SEQ40758.1
O-acetylserine dependent cystathionine beta-synthase.
    
  0.703
SER26232.1
Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
  0.703
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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