STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAD-xylose isomerase; Belongs to the xylose isomerase family. (439 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.981
SER27638.1
Glucokinase.
    
 0.787
SER14547.1
Gluconate kinase, FGGY family; Belongs to the FGGY kinase family.
 
 
 0.730
SEQ93976.1
Sugar phosphate isomerase/epimerase.
    
 0.696
SEQ01818.1
Glucokinase.
    
 0.688
SEQ65884.1
Xylose repressor, XylR.
 
  
 0.684
SEQ81362.1
Protein of unknown function.
    
 0.676
SEQ27480.1
Threonine dehydrogenase.
     
 0.674
SEQ65843.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
   
 0.670
SEQ66064.1
Uncharacterized membrane protein YesL.
 
     0.656
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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