Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEP74070.1 | SEQ25479.1 | SAMN05216362_102214 | SAMN05216362_10975 | Superfamily II DNA/RNA helicases, SNF2 family. | Flagellar operon protein TIGR03826. | 0.787 |
SEP74070.1 | SEQ52909.1 | SAMN05216362_102214 | SAMN05216362_11644 | Superfamily II DNA/RNA helicases, SNF2 family. | 5'-3' exonuclease. | 0.767 |
SEP74070.1 | SEQ65539.1 | SAMN05216362_102214 | SAMN05216362_1217 | Superfamily II DNA/RNA helicases, SNF2 family. | Superfamily II DNA or RNA helicase. | 0.712 |
SEP74070.1 | dinG | SAMN05216362_102214 | SAMN05216362_10253 | Superfamily II DNA/RNA helicases, SNF2 family. | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | 0.741 |
SEP74070.1 | polA | SAMN05216362_102214 | SAMN05216362_12410 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.910 |
SEP74070.1 | rpoA | SAMN05216362_102214 | SAMN05216362_11832 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.937 |
SEP74070.1 | rpoB | SAMN05216362_102214 | SAMN05216362_13029 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.939 |
SEP74070.1 | rpoC | SAMN05216362_102214 | SAMN05216362_13030 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.857 |
SEP74070.1 | rpoZ | SAMN05216362_102214 | SAMN05216362_10180 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.939 |
SEQ25479.1 | SEP74070.1 | SAMN05216362_10975 | SAMN05216362_102214 | Flagellar operon protein TIGR03826. | Superfamily II DNA/RNA helicases, SNF2 family. | 0.787 |
SEQ25479.1 | SEQ65539.1 | SAMN05216362_10975 | SAMN05216362_1217 | Flagellar operon protein TIGR03826. | Superfamily II DNA or RNA helicase. | 0.797 |
SEQ25479.1 | dinG | SAMN05216362_10975 | SAMN05216362_10253 | Flagellar operon protein TIGR03826. | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | 0.770 |
SEQ25479.1 | rpoA | SAMN05216362_10975 | SAMN05216362_11832 | Flagellar operon protein TIGR03826. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.781 |
SEQ25479.1 | rpoB | SAMN05216362_10975 | SAMN05216362_13029 | Flagellar operon protein TIGR03826. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.809 |
SEQ25479.1 | rpoZ | SAMN05216362_10975 | SAMN05216362_10180 | Flagellar operon protein TIGR03826. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.795 |
SEQ52909.1 | SEP74070.1 | SAMN05216362_11644 | SAMN05216362_102214 | 5'-3' exonuclease. | Superfamily II DNA/RNA helicases, SNF2 family. | 0.767 |
SEQ52909.1 | SEQ65539.1 | SAMN05216362_11644 | SAMN05216362_1217 | 5'-3' exonuclease. | Superfamily II DNA or RNA helicase. | 0.915 |
SEQ52909.1 | dinG | SAMN05216362_11644 | SAMN05216362_10253 | 5'-3' exonuclease. | ATP-dependent DNA helicase DinG; 3'-5' exonuclease. | 0.937 |
SEQ52909.1 | polA | SAMN05216362_11644 | SAMN05216362_12410 | 5'-3' exonuclease. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.723 |
SEQ65502.1 | SEQ65539.1 | SAMN05216362_1216 | SAMN05216362_1217 | 8-oxo-dGTP diphosphatase. | Superfamily II DNA or RNA helicase. | 0.941 |
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