STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ88470.1Transcriptional regulator, PaaX family. (273 aa)    
Predicted Functional Partners:
SEQ88517.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
  
 0.896
SEQ88588.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
  
 0.894
SEQ88623.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
   
 0.884
SEQ88666.1
Conserved hypothetical protein.
 
     0.855
SEQ88856.1
Thioesterase superfamily.
 
     0.718
SEQ88743.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.712
SEQ88556.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
     
 0.587
SER22632.1
Site-specific DNA-methyltransferase (adenine-specific).
   
    0.569
SEQ88697.1
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.479
SEQ88789.1
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.476
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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