STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ98258.1Minor extracellular serine protease Vpr; Belongs to the peptidase S8 family. (714 aa)    
Predicted Functional Partners:
SEP56659.1
Hypothetical protein.
  
  0.501
SEQ78290.1
Hypothetical protein.
  
  0.495
SEQ14915.1
5'-nucleotidase/2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase / 5'-nucleotidase; Belongs to the 5'-nucleotidase family.
 
  
 0.488
SEQ06913.1
Uncharacterized membrane protein YkvI.
  
     0.461
SEP85645.1
Double zinc ribbon.
   
  0.451
SEQ72861.1
Hypothetical protein.
  
     0.449
SEQ45587.1
Protein of unknown function.
   
  0.427
SEP73210.1
Stage III sporulation protein AG.
  
     0.420
SEQ72082.1
Putative sporulation protein YtaF; Probably functions as a manganese efflux pump.
  
     0.419
SEQ98223.1
Transposase DDE domain-containing protein.
       0.405
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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