STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER00288.1ATP-binding cassette, subfamily B/ATP-binding cassette, subfamily B, MsbA. (584 aa)    
Predicted Functional Partners:
SER00324.1
ATP-binding cassette, subfamily B.
 
    
0.782
SEQ02839.1
Plasmid segregation protein ParM.
  
 0.600
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.588
SEQ00666.1
NitT/TauT family transport system ATP-binding protein.
 
     
0.578
SEQ60935.1
Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif.
    
  0.508
SEQ52631.1
ATP-binding cassette, subfamily B.
 
 
 
0.481
SEP73070.1
Biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase subunit alpha; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 
 0.475
SEQ14583.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.468
SEQ28723.1
Thioredoxin.
    
  0.453
SEQ50297.1
ABC-2 type transport system permease protein.
  
 
  0.452
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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