STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER01714.1Putative acetyltransferase. (144 aa)    
Predicted Functional Partners:
SEQ12177.1
Protein N-acetyltransferase, RimJ/RimL family.
 
 
  0.765
SER01757.1
Protein of unknown function.
  
 
  0.736
SER01817.1
Two-component system, LytT family, sensor histidine kinase NatK.
       0.676
SER01857.1
Two component transcriptional regulator, LytTR family.
       0.676
SEQ59567.1
Transcriptional regulator, XRE family with cupin sensor.
    
 0.524
SER01902.1
Sodium transport system ATP-binding protein.
       0.458
SER01939.1
Sodium transport system permease protein.
       0.458
SER14373.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
  0.407
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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