STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER20427.1Transcriptional regulator, TetR family. (201 aa)    
Predicted Functional Partners:
SER20370.1
Fluoroquinolone transport system permease protein.
 
     0.946
SER20338.1
Fluoroquinolone transport system permease protein.
 
     0.931
SER20397.1
Fluoroquinolone transport system ATP-binding protein.
 
     0.922
SEQ06598.1
Putative adhesin.
  
     0.689
SEQ27568.1
Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily.
  
     0.534
SER02876.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.526
SER27324.1
YheC/D like ATP-grasp.
  
     0.520
SEQ62341.1
Major Facilitator Superfamily protein.
  
     0.518
SER20460.1
MFS transporter, PPP family, 3-phenylpropionic acid transporter.
       0.460
SEQ38705.1
Transcriptional regulator, TetR family.
  
     0.453
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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