STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER22666.1Sporulation protein YtfJ. (162 aa)    
Predicted Functional Partners:
SER22696.1
Protein of unknown function.
 
    0.948
SEP55033.1
Sporulation integral membrane protein YlbJ.
  
    0.769
SEP73400.1
Stage III sporulation protein AC.
  
     0.747
SEP73307.1
Stage III sporulation protein AE.
  
     0.741
SEQ92048.1
Stage II sporulation protein R.
  
     0.735
SEP89951.1
Sporulation protein YqfC.
  
     0.710
SEP58949.1
ATP-dependent Clp protease proteolytic subunit ClpP.
  
    0.698
SEQ98921.1
Transcriptional regulator.
  
  
 0.698
SEP72556.1
Stage IV sporulation protein B.
  
    0.692
SEP68338.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
    0.689
Your Current Organism:
Piscibacillus halophilus
NCBI taxonomy Id: 571933
Other names: CCM 7596, DSM 21633, JCM 15721, LMG 24786, LMG:24786, P. halophilus, Piscibacillus halophilus Amoozegar et al. 2009, Piscibacillus sp. HS224, strain HS224
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