STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB28149.1Periplasmic chaperone for outer membrane proteins Skp. (196 aa)    
Predicted Functional Partners:
SKB28146.1
tRNA(Arg) A34 adenosine deaminase TadA.
       0.703
SKB29502.1
Outer membrane protein assembly factor BamA.
  
  
 0.692
SKB63070.1
TPR repeat-containing protein.
  
  
 0.646
SKB75980.1
Outer membrane protein beta-barrel domain-containing protein.
  
 
 
 0.639
SKB75854.1
Hypothetical protein.
  
     0.614
SKB90188.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.613
SKB85652.1
Family of unknown function.
 
     0.604
SKB86911.1
TonB family C-terminal domain-containing protein.
  
     0.591
SKB46214.1
Hypothetical protein.
  
     0.568
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.561
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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