STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB28253.1Glycosyltransferase involved in cell wall bisynthesis. (761 aa)    
Predicted Functional Partners:
SKB28248.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.952
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.812
SKB28233.1
Predicted glycosyl hydrolase, GH43/DUF377 family.
 
     0.791
SKB72977.1
Predicted glycosyl hydrolase, GH43/DUF377 family.
  
     0.774
SKB63644.1
Predicted glycosyl hydrolase, GH43/DUF377 family.
  
     0.768
SKB36320.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
  
 0.628
SKB76095.1
alpha-L-fucosidase 2.
  
 
 0.512
SKB93136.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
  
 0.486
SKB31197.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
    
 0.464
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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