STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB29181.1Uncharacterized conserved protein YbbC, DUF1343 family. (422 aa)    
Predicted Functional Partners:
SKB63169.1
CubicO group peptidase, beta-lactamase class C family.
 
  0.985
SKB31064.1
CubicO group peptidase, beta-lactamase class C family.
 
  0.975
SKB37604.1
CubicO group peptidase, beta-lactamase class C family.
 
  0.958
SKB46687.1
CubicO group peptidase, beta-lactamase class C family; Non-canonical start codon; manually curated.
 
  0.953
SKB68301.1
Beta-glucosidase.
 
 
  0.808
SKB65492.1
CubicO group peptidase, beta-lactamase class C family.
 
 
    0.586
SKB29186.1
Lipoprotein-releasing system permease protein.
       0.580
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.545
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.