STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB29292.1tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmC. (224 aa)    
Predicted Functional Partners:
SKB29299.1
Rhodanese-related sulfurtransferase.
       0.755
SKB29288.1
XTP/dITP diphosphohydrolase.
       0.631
SKB29307.1
Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain.
       0.560
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
    
  0.474
SKB29318.1
Putative endopeptidase.
       0.461
SKB29285.1
Hypothetical protein.
       0.458
SKB68575.1
16S rRNA (cytidine1402-2'-O)-methyltransferase.
  
   
 0.416
SKB29228.1
Hypothetical protein.
       0.408
SKB29273.1
Hypothetical protein.
       0.408
SKB29281.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.408
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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