STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB29879.1Protein of unknown function. (276 aa)    
Predicted Functional Partners:
SKB29886.1
Hypothetical protein.
 
     0.951
SKB29876.1
Regulator of cell morphogenesis and NO signaling; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
 
     0.932
SKB29891.1
Metal-sulfur cluster biosynthetic enzyme.
 
     0.895
SKB30065.1
Hypothetical protein.
 
     0.635
SKB32980.1
Outer membrane protein TolC.
  
     0.594
SKB29897.1
Uncaracterized surface protein containing fasciclin (FAS1) repeats.
       0.504
SKB29866.1
Cu+-exporting ATPase.
       0.488
SKB29916.1
Cu-processing system permease protein.
 
     0.467
SKB32610.1
Cytochrome c, mono-and diheme variants.
  
     0.459
SKB29981.1
Copper chaperone NosL.
 
     0.448
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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