STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB30310.1Dihydroorotase. (465 aa)    
Predicted Functional Partners:
SKB30489.1
Uncharacterized pyridoxal phosphate-dependent enzyme.
  
    0.803
SKB32037.1
L-seryl-tRNA(Ser) seleniumtransferase.
  
    0.803
SKB32374.1
L-seryl-tRNA(Ser) seleniumtransferase.
  
    0.803
SKB51056.1
Uncharacterized pyridoxal phosphate-dependent enzyme.
  
    0.803
SKB53001.1
L-seryl-tRNA(Ser) seleniumtransferase.
  
    0.803
SKB31399.1
Uncharacterized pyridoxal phosphate-dependent enzyme.
  
    0.802
SKB46938.1
Seryl-tRNA(Sec) selenium transferase.
  
    0.802
SKB31310.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
  
     0.723
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
  0.617
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
     
  0.553
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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