STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB30413.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (372 aa)    
Predicted Functional Partners:
SKB34066.1
Phytoene/squalene synthetase.
  
 0.853
SKB30422.1
Hypothetical protein.
 
     0.849
SKB43936.1
Hypothetical protein.
   
 0.608
SKB38380.1
Carbohydrate family 9 binding domain-like.
  
     0.602
SKB67284.1
Protein of unknown function.
   
 
 0.598
SKB87376.1
Protein of unknown function.
   
 
 0.598
SKB37614.1
Cytochrome b6-f complex iron-sulfur subunit.
  
     0.564
SKB30430.1
PAS domain S-box-containing protein.
  
    0.542
SKB35090.1
Metal binding domain of Ada.
  
     0.486
SKB62243.1
Beta-carotene ketolase (CrtW type).
  
 
 0.481
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.