STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB30704.1Protein of unknown function. (238 aa)    
Predicted Functional Partners:
SKB94472.1
Protein of unknown function.
 
    
0.926
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
   
 0.883
SKB29434.1
Predicted dehydrogenase.
  
     0.765
SKB35351.1
Protein of unknown function.
  
     0.765
SKB35341.1
Predicted dehydrogenase.
  
     0.762
SKB89279.1
Hypothetical protein.
  
     0.759
SKB31886.1
Predicted dehydrogenase.
  
     0.746
SKB76177.1
Predicted dehydrogenase.
  
     0.743
SKB30715.1
Oxidoreductase family, NAD-binding Rossmann fold.
       0.682
SKB89298.1
Choline dehydrogenase.
  
     0.630
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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