STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB30746.1Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family. (352 aa)    
Predicted Functional Partners:
SKB30738.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.951
SKB31373.1
Hypothetical protein.
 
   
 0.791
SKB30585.1
Heparinase II/III-like protein.
 
     0.753
SKB80532.1
Aspartate kinase.
  
 
 0.732
SKB30986.1
Predicted dehydrogenase.
 
     0.731
SKB31922.1
Mn2+ and Fe2+ transporters of the NRAMP family.
 
     0.730
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
  
 
 0.692
SKB30765.1
L-alanine-DL-glutamate epimerase.
    
 0.690
SKB91030.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
  
  
 0.687
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
 
 0.679
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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