STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB30867.1Glucose/arabinose dehydrogenase, beta-propeller fold. (504 aa)    
Predicted Functional Partners:
SKB30844.1
Azurin.
     0.991
SKB35351.1
Protein of unknown function.
 
     0.931
SKB42712.1
Protein of unknown function.
 
     0.916
SKB30874.1
Hypothetical protein.
 
     0.826
SKB89393.1
Protein of unknown function.
 
     0.815
SKB30611.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.767
SKB89323.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
  
  
  0.692
SKB35334.1
Cytochrome c.
  
  
  0.691
SKB94484.1
Protein of unknown function.
 
      0.640
SKB82060.1
Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily.
  
     0.637
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.