STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB33049.1Haem-binding domain-containing protein. (153 aa)    
Predicted Functional Partners:
SKB41192.1
Protein of unknown function.
  
 
 0.917
SKB93210.1
Hypothetical protein.
  
 
 0.917
SKB35933.1
WD40-like Beta Propeller Repeat.
  
   0.744
SKB33027.1
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.
       0.718
SKB33035.1
Myo-inositol-1(or 4)-monophosphatase.
       0.718
SKB33016.1
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB.
       0.554
SKB29839.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
   
  
 0.511
SKB33283.1
Imidazolonepropionase.
  
   0.491
SKB39026.1
Hypothetical protein.
  
   0.491
SKB41928.1
Peptidase.
  
   0.491
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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