STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB33331.1L-lactate dehydrogenase complex protein LldE. (242 aa)    
Predicted Functional Partners:
SKB31714.1
L-lactate dehydrogenase complex protein LldF.
 0.988
SKB80061.1
L-lactate dehydrogenase complex protein LldF.
 0.988
SKB73232.1
L-lactate dehydrogenase complex protein LldG.
 
 
 0.893
SKB31732.1
L-lactate dehydrogenase complex protein LldG.
 
 
 0.756
SKB37292.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.647
SKB33323.1
MFS transporter, UMF1 family.
       0.622
SKB79892.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
  
 
 0.619
SKB33312.1
Putative auto-transporter adhesin, head GIN domain.
       0.547
SKB44594.1
Glycerol-3-phosphate dehydrogenase.
  
 
 0.541
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
  0.524
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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