STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB33729.1Long-chain fatty acid transport protein. (495 aa)    
Predicted Functional Partners:
SKB33760.1
Hypothetical protein.
       0.742
SKB85652.1
Family of unknown function.
  
     0.722
SKB62604.1
DoxX protein.
  
     0.718
SKB66015.1
Protein of unknown function.
  
     0.685
SKB28805.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
    0.666
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.663
SKB64863.1
uroporphyrinogen-III synthase.
  
     0.654
SKB73043.1
TonB family C-terminal domain-containing protein.
  
     0.649
SKB53458.1
Hypothetical protein.
  
     0.634
SKB28858.1
Protein TonB.
  
     0.628
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.