Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB30076.1 | SKB34013.1 | SAMN05661099_0330 | SAMN05661099_0695 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Coproporphyrinogen oxidase. | 0.903 |
SKB30076.1 | SKB64913.1 | SAMN05661099_0330 | SAMN05661099_2066 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.844 |
SKB30076.1 | SKB87469.1 | SAMN05661099_0330 | SAMN05661099_3224 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Putative membrane protein. | 0.905 |
SKB30076.1 | hemE | SAMN05661099_0330 | SAMN05661099_3223 | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.966 |
SKB34005.1 | SKB34013.1 | SAMN05661099_0694 | SAMN05661099_0695 | Major Facilitator Superfamily protein. | Coproporphyrinogen oxidase. | 0.671 |
SKB34005.1 | SKB34032.1 | SAMN05661099_0694 | SAMN05661099_0696 | Major Facilitator Superfamily protein. | Hypothetical protein. | 0.497 |
SKB34013.1 | SKB30076.1 | SAMN05661099_0695 | SAMN05661099_0330 | Coproporphyrinogen oxidase. | Oxygen-independent coproporphyrinogen-3 oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.903 |
SKB34013.1 | SKB34005.1 | SAMN05661099_0695 | SAMN05661099_0694 | Coproporphyrinogen oxidase. | Major Facilitator Superfamily protein. | 0.671 |
SKB34013.1 | SKB34032.1 | SAMN05661099_0695 | SAMN05661099_0696 | Coproporphyrinogen oxidase. | Hypothetical protein. | 0.773 |
SKB34013.1 | SKB34042.1 | SAMN05661099_0695 | SAMN05661099_0697 | Coproporphyrinogen oxidase. | MerR HTH family regulatory protein. | 0.526 |
SKB34013.1 | SKB34116.1 | SAMN05661099_0695 | SAMN05661099_0704 | Coproporphyrinogen oxidase. | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | 0.581 |
SKB34013.1 | SKB64913.1 | SAMN05661099_0695 | SAMN05661099_2066 | Coproporphyrinogen oxidase. | Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.837 |
SKB34013.1 | SKB87469.1 | SAMN05661099_0695 | SAMN05661099_3224 | Coproporphyrinogen oxidase. | Putative membrane protein. | 0.935 |
SKB34013.1 | gyrA | SAMN05661099_0695 | SAMN05661099_0705 | Coproporphyrinogen oxidase. | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.531 |
SKB34013.1 | hemE | SAMN05661099_0695 | SAMN05661099_3223 | Coproporphyrinogen oxidase. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.951 |
SKB34013.1 | hemH | SAMN05661099_0695 | SAMN05661099_1814 | Coproporphyrinogen oxidase. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.753 |
SKB34032.1 | SKB34005.1 | SAMN05661099_0696 | SAMN05661099_0694 | Hypothetical protein. | Major Facilitator Superfamily protein. | 0.497 |
SKB34032.1 | SKB34013.1 | SAMN05661099_0696 | SAMN05661099_0695 | Hypothetical protein. | Coproporphyrinogen oxidase. | 0.773 |
SKB34032.1 | SKB34042.1 | SAMN05661099_0696 | SAMN05661099_0697 | Hypothetical protein. | MerR HTH family regulatory protein. | 0.452 |
SKB34032.1 | SKB34116.1 | SAMN05661099_0696 | SAMN05661099_0704 | Hypothetical protein. | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | 0.449 |
page 1 of 3