STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB35241.1RNA polymerase sigma-70 factor, ECF subfamily. (183 aa)    
Predicted Functional Partners:
SKB35252.1
Anti-sigma-K factor RskA.
 
 
   0.954
SKB38297.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.763
SKB29281.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.759
SKB31557.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.752
SKB83017.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.738
SKB39799.1
RNA polymerase sigma-70 factor, ECF subfamily; Non-canonical start codon; manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.715
SKB75293.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.690
SKB71208.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.672
SKB82063.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.665
SKB86937.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.555
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.