STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB35967.1Sugar phosphate isomerase/epimerase. (292 aa)    
Predicted Functional Partners:
SKB35961.1
Hypothetical protein.
       0.648
SKB93294.1
Predicted dehydrogenase.
  
 
 0.600
SKB63838.1
Predicted dehydrogenase.
  
 
  0.592
SKB35341.1
Predicted dehydrogenase.
 
 
  0.570
SKB89279.1
Hypothetical protein.
 
 
  0.547
SKB89333.1
Predicted dehydrogenase.
 
 
  0.543
SKB89306.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
  0.533
SKB29434.1
Predicted dehydrogenase.
 
 
  0.530
SKB27918.1
Tat (twin-arginine translocation) pathway signal sequence.
   
 
  0.489
SKB89290.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.488
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.