SKB36050.1 protein (Pedobacter luteus) - STRING interaction network

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second shell of interactors

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

SKB36050.1

TPR repeat-containing protein. (111 aa)

Predicted Functional Partners:

SKB36019.1

0.843

SKB83711.1

0.685

SKB88934.1

0.643

SKB38556.1

0.641

SKB88966.1

0.607

SKB36053.1

0.602

SKB89700.1

0.578

SKB73457.1

0.570

SKB42610.1

0.548

SKB62561.1

0.542

Your Current Organism:

Pedobacter luteus

NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKB36019.1	SKB36050.1	SAMN05661099_0862	SAMN05661099_0863	Chromate transporter.	TPR repeat-containing protein.	0.843
SKB36019.1	SKB36053.1	SAMN05661099_0862	SAMN05661099_0864	Chromate transporter.	Electron transfer flavoprotein beta subunit.	0.602
SKB36050.1	SKB36019.1	SAMN05661099_0863	SAMN05661099_0862	TPR repeat-containing protein.	Chromate transporter.	0.843
SKB36050.1	SKB36053.1	SAMN05661099_0863	SAMN05661099_0864	TPR repeat-containing protein.	Electron transfer flavoprotein beta subunit.	0.602
SKB36050.1	SKB38556.1	SAMN05661099_0863	SAMN05661099_1036	TPR repeat-containing protein.	Hypothetical protein.	0.641
SKB36050.1	SKB42610.1	SAMN05661099_0863	SAMN05661099_1330	TPR repeat-containing protein.	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.	0.548
SKB36050.1	SKB62561.1	SAMN05661099_0863	SAMN05661099_1841	TPR repeat-containing protein.	Hypothetical protein.	0.542
SKB36050.1	SKB73457.1	SAMN05661099_0863	SAMN05661099_2489	TPR repeat-containing protein.	Hypothetical protein.	0.570
SKB36050.1	SKB83711.1	SAMN05661099_0863	SAMN05661099_3040	TPR repeat-containing protein.	Signal transduction histidine kinase.	0.685
SKB36050.1	SKB88934.1	SAMN05661099_0863	SAMN05661099_3291	TPR repeat-containing protein.	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	0.643
SKB36050.1	SKB88966.1	SAMN05661099_0863	SAMN05661099_3295	TPR repeat-containing protein.	Heme exporter protein B.	0.607
SKB36050.1	SKB89700.1	SAMN05661099_0863	SAMN05661099_3364	TPR repeat-containing protein.	Signal transduction histidine kinase.	0.578
SKB36053.1	SKB36019.1	SAMN05661099_0864	SAMN05661099_0862	Electron transfer flavoprotein beta subunit.	Chromate transporter.	0.602
SKB36053.1	SKB36050.1	SAMN05661099_0864	SAMN05661099_0863	Electron transfer flavoprotein beta subunit.	TPR repeat-containing protein.	0.602
SKB38556.1	SKB36050.1	SAMN05661099_1036	SAMN05661099_0863	Hypothetical protein.	TPR repeat-containing protein.	0.641
SKB38556.1	SKB73457.1	SAMN05661099_1036	SAMN05661099_2489	Hypothetical protein.	Hypothetical protein.	0.594
SKB38556.1	SKB88934.1	SAMN05661099_1036	SAMN05661099_3291	Hypothetical protein.	Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.	0.654
SKB38556.1	SKB88966.1	SAMN05661099_1036	SAMN05661099_3295	Hypothetical protein.	Heme exporter protein B.	0.692
SKB42610.1	SKB36050.1	SAMN05661099_1330	SAMN05661099_0863	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.	TPR repeat-containing protein.	0.548
SKB42610.1	SKB83711.1	SAMN05661099_1330	SAMN05661099_3040	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.	Signal transduction histidine kinase.	0.918

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Network Stats

number of nodes:

11

number of edges:

24

average node degree:

4.36

avg. local clustering coefficient:

0.872

expected number of edges:

11

PPI enrichment p-value:

0.000614

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006259

DNA metabolic process

6 of 68

1.38

1.47

7.76e-05

GO:0006260

DNA replication

3 of 20

1.61

1.04

0.0063

GO:0044260

Cellular macromolecule metabolic process

8 of 212

1.01

0.99

7.76e-05

GO:0090304

Nucleic acid metabolic process

7 of 173

1.04

0.97

0.00023

GO:0006281

DNA repair

3 of 30

1.43

0.84

0.0146

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0140097

Catalytic activity, acting on DNA

7 of 40

1.68

2.85

1.25e-08

GO:0140640

Catalytic activity, acting on a nucleic acid

9 of 117

1.32

1.99

8.56e-09

GO:0008094

ATP-dependent activity, acting on DNA

3 of 11

1.87

1.43

0.0013

GO:0016779

Nucleotidyltransferase activity

4 of 40

1.43

1.19

0.0013

GO:0003677

DNA binding

7 of 146

1.11

1.17

3.94e-05

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:434

Mismatch repair, and DNA-templated DNA replication

7 of 16

2.07

4.35

1.20e-10

CL:437

DNA damage sensor activity, and DNA-directed DNA polymerase

3 of 5

2.21

1.9

0.00022

CL:113

Cellular macromolecule metabolic process, and ATP-dependent activity

8 of 196

1.04

1.14

7.24e-06

CL:1684

Mixed, incl. UDP-N-acetylglucosamine metabolic process, and Phosphoglucosamine mutase activity

2 of 6

1.96

0.8

0.0313

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03430

Mismatch repair

5 of 21

1.81

2.51

1.54e-06

map03030

DNA replication

3 of 19

1.63

1.19

0.0029

map03440

Homologous recombination

3 of 21

1.59

1.17

0.0029

map00520

Amino sugar and nucleotide sugar metabolism

3 of 32

1.41

0.97

0.0059

map03420

Nucleotide excision repair

2 of 10

1.73

0.9

0.0167

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0238

DNA-binding

4 of 67

1.21

0.74

0.0159

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