STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB37231.1Bacteriocin-protection, YdeI or OmpD-Associated. (220 aa)    
Predicted Functional Partners:
SKB37212.1
SpoU rRNA Methylase family protein.
       0.776
SKB37242.1
Acetyltransferase (GNAT) domain-containing protein.
       0.773
SKB37199.1
Predicted arabinose efflux permease, MFS family.
       0.752
SKB37178.1
Hypothetical protein.
       0.519
SKB86869.1
Uncharacterized membrane protein YckC, RDD family.
  
     0.510
SKB67842.1
Hypothetical protein.
  
     0.481
SKB82560.1
Uncharacterized protein involved in exopolysaccharide biosynthesis.
  
     0.451
SKB82443.1
O-antigen ligase like membrane protein.
  
     0.412
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.