STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB37604.1CubicO group peptidase, beta-lactamase class C family. (608 aa)    
Predicted Functional Partners:
SKB29181.1
Uncharacterized conserved protein YbbC, DUF1343 family.
 
  0.958
SKB31053.1
Uncharacterized conserved protein YbbC, DUF1343 family.
 
  0.951
SKB81122.1
Uncharacterized conserved protein YbbC, DUF1343 family.
 
  0.948
SKB35077.1
Uncharacterized conserved protein YbbC, DUF1343 family.
 
  0.930
SKB68301.1
Beta-glucosidase.
 
 
  0.892
SKB46687.1
CubicO group peptidase, beta-lactamase class C family; Non-canonical start codon; manually curated.
 
 
0.790
SKB31064.1
CubicO group peptidase, beta-lactamase class C family.
 
 
0.782
SKB35261.1
Hexosaminidase.
    
  0.721
SKB41705.1
Hexosaminidase.
    
  0.721
SKB91672.1
Hexosaminidase.
    
  0.721
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.