STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB38437.1Uncharacterized protein. (339 aa)    
Predicted Functional Partners:
SKB38530.1
Hypothetical protein.
       0.794
SKB38574.1
Outer membrane lipoprotein-sorting protein.
  
  
 0.506
SKB38428.1
Phospholipid N-methyltransferase.
       0.505
SKB81298.1
GLPGLI family protein.
  
     0.428
SKB64546.1
Hypothetical protein.
 
  
 0.426
SKB38414.1
Hypothetical protein.
       0.411
SKB46054.1
4-hydroxyphenylpyruvate dioxygenase.
  
     0.400
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.