STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB38675.1HPt (histidine-containing phosphotransfer) domain-containing protein. (128 aa)    
Predicted Functional Partners:
SKB83711.1
Signal transduction histidine kinase.
  
 0.996
SKB89700.1
Signal transduction histidine kinase.
  
 0.995
SKB49109.1
Signal transduction histidine kinase.
  
 0.971
SKB85543.1
Hypothetical protein.
  
 0.971
SKB27933.1
Signal transduction histidine kinase.
  
 0.951
SKB30286.1
Signal transduction histidine kinase.
  
 0.951
SKB31394.1
Signal transduction histidine kinase.
  
 0.951
SKB51042.1
Response regulator receiver domain-containing protein.
 
 0.841
SKB41316.1
Response regulator receiver domain-containing protein.
 
 0.838
SKB38740.1
2-amino-4-hydroxy-6- hydroxymethyldihydropteridinediphosphokinase.
       0.821
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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