STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB39057.1TonB-linked outer membrane protein, SusC/RagA family. (1040 aa)    
Predicted Functional Partners:
SKB39070.1
Starch-binding associating with outer membrane.
 
 
   0.975
SKB50226.1
Starch-binding associating with outer membrane.
 
 
   0.823
SKB44898.1
Starch-binding associating with outer membrane.
  
 
   0.776
SKB42003.1
SusD family protein.
  
 
   0.716
SKB32356.1
Susd and RagB outer membrane lipoprotein.
 
 
   0.690
SKB75963.1
Starch-binding associating with outer membrane.
  
 
   0.687
SKB39080.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
 
     0.676
SKB35277.1
SusD family protein.
  
 
   0.667
SKB44429.1
Starch-binding associating with outer membrane.
 
 
   0.650
SKB32021.1
Starch-binding associating with outer membrane.
 
 
   0.645
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.