Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB39121.1 | SKB39129.1 | SAMN05661099_1069 | SAMN05661099_1070 | DNA-binding transcriptional regulator, MarR family. | Thioredoxin reductase (NADPH). | 0.676 |
SKB39121.1 | SKB39139.1 | SAMN05661099_1069 | SAMN05661099_1071 | DNA-binding transcriptional regulator, MarR family. | Ferredoxin, 2Fe-2S. | 0.669 |
SKB39121.1 | SKB39169.1 | SAMN05661099_1069 | SAMN05661099_1072 | DNA-binding transcriptional regulator, MarR family. | NADH dehydrogenase. | 0.410 |
SKB39121.1 | pgi | SAMN05661099_1069 | SAMN05661099_2115 | DNA-binding transcriptional regulator, MarR family. | Glucose-6-phosphate isomerase; Belongs to the GPI family. | 0.402 |
SKB39121.1 | secF | SAMN05661099_1069 | SAMN05661099_1068 | DNA-binding transcriptional regulator, MarR family. | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.538 |
SKB39129.1 | SKB39121.1 | SAMN05661099_1070 | SAMN05661099_1069 | Thioredoxin reductase (NADPH). | DNA-binding transcriptional regulator, MarR family. | 0.676 |
SKB39129.1 | SKB39139.1 | SAMN05661099_1070 | SAMN05661099_1071 | Thioredoxin reductase (NADPH). | Ferredoxin, 2Fe-2S. | 0.985 |
SKB39129.1 | SKB39169.1 | SAMN05661099_1070 | SAMN05661099_1072 | Thioredoxin reductase (NADPH). | NADH dehydrogenase. | 0.706 |
SKB39129.1 | secF | SAMN05661099_1070 | SAMN05661099_1068 | Thioredoxin reductase (NADPH). | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.557 |
SKB39139.1 | SKB39121.1 | SAMN05661099_1071 | SAMN05661099_1069 | Ferredoxin, 2Fe-2S. | DNA-binding transcriptional regulator, MarR family. | 0.669 |
SKB39139.1 | SKB39129.1 | SAMN05661099_1071 | SAMN05661099_1070 | Ferredoxin, 2Fe-2S. | Thioredoxin reductase (NADPH). | 0.985 |
SKB39139.1 | SKB39169.1 | SAMN05661099_1071 | SAMN05661099_1072 | Ferredoxin, 2Fe-2S. | NADH dehydrogenase. | 0.552 |
SKB39169.1 | SKB39121.1 | SAMN05661099_1072 | SAMN05661099_1069 | NADH dehydrogenase. | DNA-binding transcriptional regulator, MarR family. | 0.410 |
SKB39169.1 | SKB39129.1 | SAMN05661099_1072 | SAMN05661099_1070 | NADH dehydrogenase. | Thioredoxin reductase (NADPH). | 0.706 |
SKB39169.1 | SKB39139.1 | SAMN05661099_1072 | SAMN05661099_1071 | NADH dehydrogenase. | Ferredoxin, 2Fe-2S. | 0.552 |
SKB39169.1 | secF | SAMN05661099_1072 | SAMN05661099_1068 | NADH dehydrogenase. | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.512 |
pgi | SKB39121.1 | SAMN05661099_2115 | SAMN05661099_1069 | Glucose-6-phosphate isomerase; Belongs to the GPI family. | DNA-binding transcriptional regulator, MarR family. | 0.402 |
secF | SKB39121.1 | SAMN05661099_1068 | SAMN05661099_1069 | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | DNA-binding transcriptional regulator, MarR family. | 0.538 |
secF | SKB39129.1 | SAMN05661099_1068 | SAMN05661099_1070 | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | Thioredoxin reductase (NADPH). | 0.557 |
secF | SKB39169.1 | SAMN05661099_1068 | SAMN05661099_1072 | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | NADH dehydrogenase. | 0.512 |