STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB39959.1Signal transduction histidine kinase. (412 aa)    
Predicted Functional Partners:
SKB83711.1
Signal transduction histidine kinase.
  
 0.999
SKB89700.1
Signal transduction histidine kinase.
  
 0.993
SKB49109.1
Signal transduction histidine kinase.
 
0.977
SKB79581.1
PAS domain S-box-containing protein.
  
 0.977
SKB85543.1
Hypothetical protein.
  
 0.976
SKB39971.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.962
SKB83725.1
Signal transduction histidine kinase.
 
 
  0.889
SKB30286.1
Signal transduction histidine kinase.
  
0.874
SKB29356.1
Signal transduction histidine kinase.
  
 0.870
SKB80016.1
2-oxoisovalerate dehydrogenase E1 component.
    
 0.865
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.