STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB40714.1Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains. (667 aa)    
Predicted Functional Partners:
SKB41027.1
Type I restriction enzyme, R subunit.
  
    0.640
SKB41013.1
Type I restriction enzyme, S subunit.
  
    0.632
SKB33975.1
Winged helix-turn-helix DNA-binding.
  
    0.538
SKB40722.1
Hypothetical protein.
       0.495
SKB40730.1
Hypothetical protein.
       0.477
SKB41021.1
Type I restriction enzyme M protein.
  
  
 0.432
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
Server load: low (18%) [HD]