STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB41192.1Protein of unknown function. (397 aa)    
Predicted Functional Partners:
SKB32152.1
Haem-binding domain-containing protein.
  
 
 0.917
SKB33049.1
Haem-binding domain-containing protein.
  
 
 0.917
SKB30844.1
Azurin.
    
 
 0.908
SKB35933.1
WD40-like Beta Propeller Repeat.
   
   0.852
SKB37292.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.850
SKB41213.1
Carboxypeptidase regulatory-like domain-containing protein.
  
    0.789
SKB29662.1
Quinoprotein glucose dehydrogenase.
  
 0.782
SKB41204.1
Hypothetical protein.
       0.773
SKB41209.1
O-antigen ligase.
       0.773
SKB41234.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
       0.757
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.