STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB41209.1O-antigen ligase. (586 aa)    
Predicted Functional Partners:
SKB93136.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
  
  
 0.878
SKB41192.1
Protein of unknown function.
       0.773
SKB41204.1
Hypothetical protein.
       0.773
SKB41213.1
Carboxypeptidase regulatory-like domain-containing protein.
       0.773
SKB41234.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
       0.757
SKB41168.1
Hypothetical protein.
       0.585
SKB62223.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.523
SKB39750.1
Exodeoxyribonuclease-3.
  
     0.517
SKB38799.1
ADP-heptose:LPS heptosyltransferase.
  
 
 0.514
SKB41159.1
Hypothetical protein.
       0.483
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.