Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB42972.1 | SKB42979.1 | SAMN05661099_1371 | SAMN05661099_1372 | Acetyl esterase/lipase. | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.773 |
SKB42972.1 | SKB42994.1 | SAMN05661099_1371 | SAMN05661099_1374 | Acetyl esterase/lipase. | Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.496 |
SKB42972.1 | SKB43004.1 | SAMN05661099_1371 | SAMN05661099_1375 | Acetyl esterase/lipase. | Hypothetical protein; Belongs to the LOG family. | 0.459 |
SKB42972.1 | recR | SAMN05661099_1371 | SAMN05661099_1373 | Acetyl esterase/lipase. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.718 |
SKB42979.1 | SKB42972.1 | SAMN05661099_1372 | SAMN05661099_1371 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Acetyl esterase/lipase. | 0.773 |
SKB42979.1 | SKB42994.1 | SAMN05661099_1372 | SAMN05661099_1374 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.667 |
SKB42979.1 | SKB43004.1 | SAMN05661099_1372 | SAMN05661099_1375 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Hypothetical protein; Belongs to the LOG family. | 0.646 |
SKB42979.1 | recR | SAMN05661099_1372 | SAMN05661099_1373 | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.810 |
SKB42994.1 | SKB42972.1 | SAMN05661099_1374 | SAMN05661099_1371 | Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | Acetyl esterase/lipase. | 0.496 |
SKB42994.1 | SKB42979.1 | SAMN05661099_1374 | SAMN05661099_1372 | Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.667 |
SKB42994.1 | SKB43004.1 | SAMN05661099_1374 | SAMN05661099_1375 | Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | Hypothetical protein; Belongs to the LOG family. | 0.807 |
SKB42994.1 | recR | SAMN05661099_1374 | SAMN05661099_1373 | Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.689 |
SKB43004.1 | SKB42972.1 | SAMN05661099_1375 | SAMN05661099_1371 | Hypothetical protein; Belongs to the LOG family. | Acetyl esterase/lipase. | 0.459 |
SKB43004.1 | SKB42979.1 | SAMN05661099_1375 | SAMN05661099_1372 | Hypothetical protein; Belongs to the LOG family. | Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.646 |
SKB43004.1 | SKB42994.1 | SAMN05661099_1375 | SAMN05661099_1374 | Hypothetical protein; Belongs to the LOG family. | Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. | 0.807 |
SKB43004.1 | recR | SAMN05661099_1375 | SAMN05661099_1373 | Hypothetical protein; Belongs to the LOG family. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.666 |
SKB72329.1 | dnaX | SAMN05661099_2396 | SAMN05661099_1710 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.511 |
SKB72329.1 | recR | SAMN05661099_2396 | SAMN05661099_1373 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.943 |
SKB91782.1 | recF | SAMN05661099_3456 | SAMN05661099_1891 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.470 |
SKB91782.1 | recR | SAMN05661099_3456 | SAMN05661099_1373 | DNA helicase-2 / ATP-dependent DNA helicase PcrA. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.614 |
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