STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB43049.1Predicted Zn-dependent peptidase. (411 aa)    
Predicted Functional Partners:
SKB43040.1
Predicted Zn-dependent peptidase.
     0.996
SKB37614.1
Cytochrome b6-f complex iron-sulfur subunit.
   
 0.944
SKB62539.1
Hypothetical protein.
   
 0.944
SKB67651.1
NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 
 0.936
SKB67642.1
NADH-quinone oxidoreductase subunit G.
   
 
 0.933
SKB65597.1
Predicted Zn-dependent peptidase.
    
0.930
SKB67656.1
NADH-quinone oxidoreductase subunit E.
   
   0.930
SKB65307.1
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
 
 0.897
SKB65293.1
Cytochrome c oxidase subunit 1; Belongs to the heme-copper respiratory oxidase family.
    
 
 0.895
SKB42495.1
Deoxyadenosine/deoxycytidine kinase.
   
   0.720
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.