STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB44493.1Hypothetical protein. (505 aa)    
Predicted Functional Partners:
SKB44839.1
Cysteine desulfurase family protein, VC1184 subfamily.
    
   0.898
SKB44429.1
Starch-binding associating with outer membrane.
       0.726
SKB44408.1
TonB-linked outer membrane protein, SusC/RagA family.
       0.717
SKB44506.1
N terminal of Calcineurin-like phosphoesterase.
       0.649
SKB44565.1
Lysophospholipase L1.
       0.494
SKB44530.1
Glycerophosphoryl diester phosphodiesterase.
       0.493
SKB44542.1
MFS transporter, OPA family, glycerol-3-phosphate transporter.
       0.493
SKB36320.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
   
    0.400
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.