STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB44646.1Gliding motility-associated C-terminal domain-containing protein. (1389 aa)    
Predicted Functional Partners:
SKB43481.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.780
SKB81108.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.653
SKB63600.1
Hypothetical protein.
  
     0.596
SKB73590.1
Carbohydrate family 9 binding domain-like.
  
     0.540
SKB62967.1
Gliding motility-associated C-terminal domain-containing protein.
  
  
 
0.537
SKB54838.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.535
SKB62860.1
Starch-binding associating with outer membrane.
  
  
  0.528
SKB76380.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.521
SKB92228.1
Gliding motility-associated C-terminal domain-containing protein.
  
  
 
0.507
SKB84079.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.483
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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