STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB45067.1Hypothetical protein. (392 aa)    
Predicted Functional Partners:
SKB45056.1
Hypothetical protein.
 
     0.963
SKB45041.1
Uncharacterized membrane protein SpoIIM, required for sporulation.
 
     0.962
SKB45048.1
Hypothetical protein.
 
     0.961
SKB45090.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
    0.937
SKB45035.1
Uncharacterized membrane protein YckC, RDD family.
 
     0.904
SKB45076.1
MoxR-like ATPase.
 
    0.863
SKB45140.1
Uncharacterized protein YjiK.
 
     0.668
SKB45120.1
Signal transduction histidine kinase.
 
     0.613
SKB45107.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
     0.563
SKB45130.1
Putative beta-lactamase-inhibitor-like, PepSY-like.
 
     0.531
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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