STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB46316.1Hypothetical protein. (311 aa)    
Predicted Functional Partners:
tdk
Thymidine kinase.
       0.690
SKB66387.1
Hypothetical protein.
  
     0.552
SKB53518.1
Putative porin.
  
     0.532
SKB28888.1
TonB dependent receptor.
  
     0.526
SKB33121.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.516
SKB68510.1
Hypothetical protein.
  
     0.515
SKB85652.1
Family of unknown function.
  
     0.486
SKB90188.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.471
SKB87452.1
Hypothetical protein.
  
     0.463
SKB43402.1
Hypothetical protein.
  
     0.457
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.