Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB30585.1 | SKB46411.1 | SAMN05661099_0383 | SAMN05661099_1564 | Heparinase II/III-like protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.696 |
SKB30585.1 | secY | SAMN05661099_0383 | SAMN05661099_1784 | Heparinase II/III-like protein. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.602 |
SKB37738.1 | SKB38587.1 | SAMN05661099_0983 | SAMN05661099_1038 | Listeria/Bacterioides repeat-containing protein. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.535 |
SKB37738.1 | SKB46411.1 | SAMN05661099_0983 | SAMN05661099_1564 | Listeria/Bacterioides repeat-containing protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.467 |
SKB38587.1 | SKB37738.1 | SAMN05661099_1038 | SAMN05661099_0983 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Listeria/Bacterioides repeat-containing protein. | 0.535 |
SKB38587.1 | SKB46411.1 | SAMN05661099_1038 | SAMN05661099_1564 | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | Por secretion system C-terminal sorting domain-containing protein. | 0.481 |
SKB44783.1 | SKB46411.1 | SAMN05661099_1483 | SAMN05661099_1564 | Putative metal-binding motif-containing protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.696 |
SKB44783.1 | secY | SAMN05661099_1483 | SAMN05661099_1784 | Putative metal-binding motif-containing protein. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.602 |
SKB46411.1 | SKB30585.1 | SAMN05661099_1564 | SAMN05661099_0383 | Por secretion system C-terminal sorting domain-containing protein. | Heparinase II/III-like protein. | 0.696 |
SKB46411.1 | SKB37738.1 | SAMN05661099_1564 | SAMN05661099_0983 | Por secretion system C-terminal sorting domain-containing protein. | Listeria/Bacterioides repeat-containing protein. | 0.467 |
SKB46411.1 | SKB38587.1 | SAMN05661099_1564 | SAMN05661099_1038 | Por secretion system C-terminal sorting domain-containing protein. | DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family. | 0.481 |
SKB46411.1 | SKB44783.1 | SAMN05661099_1564 | SAMN05661099_1483 | Por secretion system C-terminal sorting domain-containing protein. | Putative metal-binding motif-containing protein. | 0.696 |
SKB46411.1 | SKB46457.1 | SAMN05661099_1564 | SAMN05661099_1565 | Por secretion system C-terminal sorting domain-containing protein. | CheY chemotaxis protein or a CheY-like REC (receiver) domain. | 0.512 |
SKB46411.1 | SKB62451.1 | SAMN05661099_1564 | SAMN05661099_1828 | Por secretion system C-terminal sorting domain-containing protein. | Hypothetical protein. | 0.440 |
SKB46411.1 | SKB62956.1 | SAMN05661099_1564 | SAMN05661099_1876 | Por secretion system C-terminal sorting domain-containing protein. | Hypothetical protein. | 0.440 |
SKB46411.1 | secY | SAMN05661099_1564 | SAMN05661099_1784 | Por secretion system C-terminal sorting domain-containing protein. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.538 |
SKB46457.1 | SKB46411.1 | SAMN05661099_1565 | SAMN05661099_1564 | CheY chemotaxis protein or a CheY-like REC (receiver) domain. | Por secretion system C-terminal sorting domain-containing protein. | 0.512 |
SKB62451.1 | SKB46411.1 | SAMN05661099_1828 | SAMN05661099_1564 | Hypothetical protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.440 |
SKB62956.1 | SKB46411.1 | SAMN05661099_1876 | SAMN05661099_1564 | Hypothetical protein. | Por secretion system C-terminal sorting domain-containing protein. | 0.440 |
secY | SKB30585.1 | SAMN05661099_1784 | SAMN05661099_0383 | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | Heparinase II/III-like protein. | 0.602 |
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