STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB47518.1Starch-binding associating with outer membrane. (572 aa)    
Predicted Functional Partners:
atpE
F-type H+-transporting ATPase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.997
SKB47605.1
TonB-linked outer membrane protein, SusC/RagA family.
     0.954
SKB75451.1
Predicted naringenin-chalcone synthase.
    
 0.644
SKB40356.1
Hypothetical protein.
  
     0.606
SKB47312.1
Alpha-1,2-mannosidase, putative.
 
     0.569
SKB40453.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.557
SKB40373.1
SusD family protein.
  
     0.556
SKB32801.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.539
SKB47469.1
Glucokinase.
 
     0.538
SKB88394.1
Starch-binding associating with outer membrane.
  
     0.516
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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