STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB48286.1Ankyrin repeat. (489 aa)    
Predicted Functional Partners:
SKB48172.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
 
 
 0.977
SKB48244.1
Predicted protein; Manually curated.
 
     0.956
SKB88690.1
WD domain-containing protein, G-beta repeat-containing protein.
    
 0.913
SKB33336.1
Alkaline phosphatase.
   
 0.907
SKB53678.1
Sulfate permease, SulP family.
    
 
 0.903
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
  0.880
SKB67193.1
Choline dehydrogenase.
    
 0.854
SKB89298.1
Choline dehydrogenase.
    
 0.854
SKB48130.1
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
    0.842
SKB91770.1
Tetratricopeptide repeat-containing protein.
   
 0.777
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.