STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB49559.1Putative ABC transport system permease protein. (369 aa)    
Predicted Functional Partners:
SKB49635.1
Putative ABC transport system permease protein.
 
    0.955
SKB49646.1
Putative ABC transport system ATP-binding protein.
 
  0.917
SKB49725.1
HlyD family secretion protein.
 
   0.887
SKB49541.1
Putative ABC transport system permease protein.
 
   
0.870
SKB49445.1
HAMP domain-containing protein.
 
     0.832
SKB49518.1
Putative ABC transport system permease protein.
 
    
0.827
SKB42466.1
Putative ABC transport system ATP-binding protein.
 
  0.819
SKB42425.1
Putative ABC transport system permease protein.
  
     0.710
SKB31273.1
Putative ABC transport system ATP-binding protein.
 
  0.704
SKB49681.1
Outer membrane efflux protein.
 
 
   0.680
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.