STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB49908.1Hypothetical protein. (284 aa)    
Predicted Functional Partners:
SKB49894.1
Putative lumazine-binding.
       0.550
SKB49998.1
Transcriptional regulator, HxlR family.
       0.519
SKB94696.1
Putative lumazine-binding.
  
     0.510
SKB41013.1
Type I restriction enzyme, S subunit.
  
     0.500
SKB41027.1
Type I restriction enzyme, R subunit.
  
     0.449
SKB34886.1
Predicted endonuclease, GIY-YIG superfamily; Manually curated.
  
     0.436
SKB41021.1
Type I restriction enzyme M protein.
  
     0.412
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.