STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB64748.1Penicillin-binding protein 1A. (744 aa)    
Predicted Functional Partners:
SKB41923.1
Penicillin-binding protein 1A.
 
 
0.916
SKB46280.1
Penicillin-binding protein 2.
  
 
 0.849
SKB32693.1
Cell division protein FtsW, lipid II flippase; Belongs to the SEDS family.
   
 0.840
SKB64734.1
Tetratricopeptide repeat-containing protein; Manually curated.
       0.830
SKB89563.1
Cell division protein FtsI (penicillin-binding protein 3).
  
 
 0.822
SKB28885.1
Hypothetical protein.
    
 
 0.721
SKB66196.1
LPS export ABC transporter protein LptC.
    
 
 0.721
SKB46304.1
Rod shape determining protein RodA; Belongs to the SEDS family.
  
 
 
 0.705
mraY
Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
  
  
 0.682
mltG
UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
   
 0.664
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.