STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB68510.1Hypothetical protein. (256 aa)    
Predicted Functional Partners:
SKB53518.1
Putative porin.
  
     0.756
SKB66387.1
Hypothetical protein.
  
     0.748
SKB64876.1
Protein of unknown function.
  
     0.690
SKB92369.1
CarboxypepD_reg-like domain-containing protein.
  
     0.686
SKB28107.1
pRiA4b ORF-3-like protein.
  
     0.684
SKB28869.1
Hypothetical protein.
  
   0.684
SKB43402.1
Hypothetical protein.
  
     0.675
SKB71060.1
TPR repeat-containing protein.
  
     0.664
SKB87452.1
Hypothetical protein.
  
     0.656
SKB64822.1
Gliding motility-associated protein GldM.
  
     0.651
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.