STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB70033.1Glycosyltransferase involved in cell wall bisynthesis; Manually curated. (322 aa)    
Predicted Functional Partners:
SKB69988.1
ATP-binding cassette, subfamily B, MsbA.
  
    0.790
SKB70018.1
Glycosyltransferase involved in cell wall bisynthesis.
  
    0.788
SKB69972.1
Glycosyltransferase, GT2 family.
 
  
  0.696
SKB93136.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.651
SKB93561.1
Glycosyltransferase, GT2 family.
  
     0.634
SKB82204.1
Hypothetical protein.
  
  
  0.540
SKB93264.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid); Manually curated.
    0.530
SKB82575.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
    0.499
SKB65104.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.478
SKB89806.1
dTDP-4-dehydrorhamnose reductase.
  
  
 0.469
Your Current Organism:
Pedobacter luteus
NCBI taxonomy Id: 572036
Other names: DSM 22385, KCTC 22699, P. luteus, Pedobacter luteus Oh et al. 2013, Pedobacter sp. B4a-b5, Pedobacter sp. N7d-4, strain N7d-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.